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1

High-level classification of the Fungi and a tool for evolutionary ecological analyses

Tedersoo, Leho, Sánchez-Ramírez, Santiago, Kõljalg, Urmas, Bahram, Mohammad, Döring, Markus, Schigel, Dmitry, May, Tom, Ryberg, Martin, Abarenkov, Kessy

Journal:

Fungal Diversity

Year:

2018

Language:

english

File:

PDF, 1.04 MB

english, 2018

2

Global diversity and geography of soil fungi

Tedersoo, L., Bahram, M., Polme, S., Koljalg, U., Yorou, N. S., Wijesundera, R., Ruiz, L. V., Vasco-Palacios, A. M., Thu, P. Q., Suija, A., Smith, M. E., Sharp, C., Saluveer, E., Saitta, A., Rosas, M.

Journal:

Year:

2014

Language:

english

File:

PDF, 8.44 MB

english, 2014

3

Divergent arbuscular mycorrhizal fungal communities colonize roots of Pulsatilla spp. in boreal Scots pine forest and grassland soils

Maarja Öpik, Mari Moora, Jaan Liira, Urmas Kõljalg, Martin Zobel, Robin Sen

Journal:

New Phytologist

Year:

2003

Language:

english

File:

PDF, 370 KB

english, 2003

4

Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar

LEHO TEDERSOO, MOHAMMAD BAHRAM, TEELE JAIRUS, ENEKE BECHEM, STEPHEN CHINOYA, REBECCA MPUMBA, MIGUEL LEAL, EMILE RANDRIANJOHANY, SYLVAIN RAZAFIMANDIMBISON, AVE SADAM, TRIIN NAADEL, URMAS KÕLJALG

Journal:

Molecular Ecology

Year:

2011

Language:

english

File:

PDF, 211 KB

english, 2011

5

Evolution of nutritional modes of Ceratobasidiaceae (Cantharellales, Basidiomycota) as revealed from publicly available ITS sequences

Veldre, Vilmar, Abarenkov, Kessy, Bahram, Mohammad, Martos, Florent, Selosse, Marc-Andre, Tamm, Heidi, Kõljalg, Urmas, Tedersoo, Leho

Journal:

Year:

2013

Language:

english

File:

PDF, 529 KB

english, 2013

6

Phylogenetic relationships in Hypomyces and allied genera, with emphasis on species growing on wood-decaying homobasidiomycetes

Põldmaa, Kadri, Larsson, Ellen, Kõljalg, Urmas

Journal:

Canadian Journal of Botany

Year:

2000

File:

PDF, 273 KB

2000

7

Stable isotope analysis, field observations and synthesis experiments suggest that Odontia is a non-mycorrhizal sister genus of Tomentella and Thelephora

Tedersoo, Leho, Harend, Helery, Buegger, Franz, Pritsch, Karin, Saar, Irja, Kõljalg, Urmas

Journal:

Year:

2014

Language:

english

File:

PDF, 506 KB

english, 2014

8

Divergent Arbuscular Mycorrhizal Fungal Communities Colonize Roots of Pulsatilla spp. in Boreal Scots Pine Forest and Grassland Soils

Maarja Öpik, Mari Moora, Jaan Liira, Urmas Kõljalg, Martin Zobel and Robin Sen

Journal:

New Phytologist

Year:

2003

Language:

english

File:

PDF, 2.06 MB

english, 2003

9

Response to Comment on "Global diversity and geography of soil fungi"

Tedersoo, L., Bahram, M., Polme, S., Anslan, S., Riit, T., Koljalg, U., Nilsson, R. H., Hildebrand, F., Abarenkov, K.

Journal:

Year:

2015

Language:

english

File:

PDF, 432 KB

english, 2015

10

Arbuscular mycorrhizal fungi associating with roots of Alnus and Rubus in Europe and the Middle East

Põlme, Sergei, Öpik, Maarja, Moora, Mari, Zobel, Martin, Kohout, Petr, Oja, Jane, Kõljalg, Urmas, Tedersoo, Leho

Journal:

Year:

2016

Language:

english

File:

PDF, 1.57 MB

english, 2016

11

A combination of the probiotic and prebiotic product can prevent the germination of Clostridium difficile spores and infection

Rätsep, M., Kõljalg, S., Sepp, E., Smidt, I., Truusalu, K., Songisepp, E., Stsepetova, J., Naaber, P., Mikelsaar, R.H., Mikelsaar, M.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

12

Calibration of fusidic acid disk diffusion susceptibility testing of Staphylococcus aureus

BARBRO OLSSON-LILJEQUIST, SIIRI KÕLJALG, INGA KARLSSON, GÖRAN KRONVALL

Journal:

Year:

2002

Language:

english

File:

PDF, 135 KB

english, 2002

13

Diversity and abundance of resupinate thelephoroid fungi as ectomycorrhizal symbionts in Swedish boreal forests

U. Kõljalg, A. Dahlberg, A. F. S. Taylor, E. Larsson, N. Hallenberg, J. Stenlid, K.-H. Larsson, P. M. Fransson, O. Kårén, L. Jonsson

Journal:

Molecular Ecology

Year:

2000

Language:

english

File:

PDF, 632 KB

english, 2000

14

Nasopharyngeal carriage and antibacterial susceptibility of Streptococcus pneumoniae, Haemophilus influenzae and Moraxella catarrhalis in Estonian children

P. Naaber, E. Tamm, A. Pütsepp, S. Kõljalg, M. Maimets

Journal:

Clinical Microbiology and Infection

Year:

2000

Language:

english

File:

PDF, 396 KB

english, 2000

15

Fine scale distribution of ectomycorrhizal fungi and roots across substrate layers including coarse woody debris in a mixed forest

Leho Tedersoo, Urmas Kõljalg, Nils Hallenberg, Karl-Henrik Larsson

Journal:

New Phytologist

Year:

2003

Language:

english

File:

PDF, 1.68 MB

english, 2003

16

The occurrence of antimicrobial resistance and class 1 integrons among commensalEscherichia coliisolates from infants and elderly persons

Epp Sepp, Jelena Stsepetova, Krista Lõivukene, Kai Truusalu, Siiri Kõljalg, Paul Naaber, Marika Mikelsaar

Journal:

Annals of Clinical Microbiology and Antimicrobials

Year:

2009

Language:

english

File:

PDF, 493 KB

english, 2009

17

Parallel evolutionary paths to mycoheterotrophy in understorey Ericaceae and Orchidaceae: ecological evidence for mixotrophy in Pyroleae

Leho Tedersoo, Prune Pellet, Urmas Kõljalg, Marc-André Selosse

Journal:

Year:

2007

Language:

english

File:

PDF, 334 KB

english, 2007

18

Fungal associates ofPyrola rotundifolia, a mixotrophic Ericaceae, from two Estonian boreal forests

Lucie Vincenot, Leho Tedersoo, Franck Richard, Houria Horcine, Urmas Kõljalg, Marc-André Selosse

Journal:

Year:

2008

Language:

english

File:

PDF, 523 KB

english, 2008

19

Establishment of ectomycorrhizal fungal community on isolatedNothofagus cunninghamiiseedlings regenerating on dead wood in Australian wet temperate forests: does fruit-body type matter?

Leho Tedersoo, Genevieve Gates, Chris W. Dunk, Teresa Lebel, Tom W. May, Urmas Kõljalg, Teele Jairus

Journal:

Year:

2009

Language:

english

File:

PDF, 328 KB

english, 2009

20

A note on the incidence of reverse complementary fungal ITS sequences in the public sequence databases and a software tool for their detection and reorientation

R. Henrik Nilsson, Vilmar Veldre, Zheng Wang, Martin Eckart, Sara Branco, Martin Hartmann, Christopher Quince, Anna Godhe, Yann Bertrand, Johan F. Alfredsson, Karl-Henrik Larsson, Urmas Kõljalg, Kessy

Journal:

Year:

2011

Language:

english

File:

PDF, 430 KB

english, 2011

21

ITS rDNA sequence-based phylogenetic analysis ofTomentellopsisspecies from boreal and temperate forests, and the identification of pink-type ectomycorrhizas

Urmas Kõljalg, Hanna Tammi, Sari Timonen, Reinhard Agerer, Robin Sen

Journal:

Mycological Progress

Year:

2002

Language:

english

File:

PDF, 297 KB

english, 2002

22

Studies in African thelephoroid fungi: 1.Tomentella capitataandTomentella brunneocystidia, two new species from Benin (West Africa) with capitate cystidia

Nourou Soulemane Yorou, Urmas Kõljalg, Brice Sinsin, Reinhard Agerer

Journal:

Mycological Progress

Year:

2007

Language:

english

File:

PDF, 617 KB

english, 2007

23

The phylogeny and taxonomy of generaCystodermaandCystodermella(Agaricales) based on nuclear ITS and LSU sequences

Irja Saar, Kadri Põldmaa, Urmas Kõljalg

Journal:

Mycological Progress

Year:

2009

Language:

english

File:

PDF, 374 KB

english, 2009

24

Forest microsite effects on community composition of ectomycorrhizal fungi on seedlings of Picea abies and Betula pendula

Leho Tedersoo, Triin Suvi, Teele Jairus, Urmas Kõljalg

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 491 KB

english, 2008

25

Antimicrobial susceptibility and serogroup/serotype distribution of nasopharyngeal isolates of Streptococcus pneumoniae in healthy Estonian children in 1999–2003

E. Tamm, P. Naaber, M. Maimets, M. Oona, S. Kõljalg, I. Lutsar

Journal:

Clinical Microbiology and Infection

Year:

2007

Language:

english

File:

PDF, 60 KB

english, 2007

26

UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

Urmas Kõljalg, Karl-Henrik Larsson, Kessy Abarenkov, R. Henrik Nilsson, Ian J. Alexander, Ursula Eberhardt, Susanne Erland, Klaus Høiland, Rasmus Kjøller, Ellen Larsson, Taina Pennanen, Robin Sen, And

Journal:

New Phytologist

Year:

2005

Language:

english

File:

PDF, 197 KB

english, 2005

27

Ectomycorrhizal fungi of the Seychelles: diversity patterns and host shifts from the native Vateriopsis seychellarum (Dipterocarpaceae) and Intsia bijuga (Caesalpiniaceae) to the introduced Eucalyptus robusta (Myrtaceae), but not Pinus caribea (Pinaceae)

Leho Tedersoo, Triin Suvi, Katy Beaver, Urmas Kõljalg

Journal:

New Phytologist

Year:

2007

Language:

english

File:

PDF, 1.14 MB

english, 2007

28

Strong host preference of ectomycorrhizal fungi in a Tasmanian wet sclerophyll forest as revealed by DNA barcoding and taxon-specific primers

Leho Tedersoo, Teele Jairus, Bryony M. Horton, Kessy Abarenkov, Triin Suvi, Irja Saar, Urmas Kõljalg

Journal:

New Phytologist

Year:

2008

Language:

english

File:

PDF, 307 KB

english, 2008

29

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

Leho Tedersoo, R. Henrik Nilsson, Kessy Abarenkov, Teele Jairus, Ave Sadam, Irja Saar, Mohammad Bahram, Eneke Bechem, George Chuyong, Urmas Kõljalg

Journal:

New Phytologist

Year:

2010

Language:

english

File:

PDF, 336 KB

english, 2010

30

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

R. Henrik Nilsson, Leho Tedersoo, Björn D. Lindahl, Rasmus Kjøller, Tor Carlsen, Christopher Quince, Kessy Abarenkov, Taina Pennanen, Jan Stenlid, Tom Bruns, Karl-Henrik Larsson, Urmas Kõljalg, Håvard

Journal:

New Phytologist

Year:

2011

Language:

english

File:

PDF, 252 KB

english, 2011

31

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran

Mohammad Bahram, Sergei Põlme, Urmas Kõljalg, Shahin Zarre, Leho Tedersoo

Journal:

New Phytologist

Year:

2012

Language:

english

File:

PDF, 420 KB

english, 2012

32

Monitoring of Biological Diversity: a Common-Ground Approach

TIIT TEDER, MARI MOORA, ELLE ROOSALUSTE, KRISTJAN ZOBEL, MEELIS PÄRTEL, URMAS KÕLJALG, MARTIN ZOBEL

Journal:

Conservation Biology

Year:

2007

Language:

english

File:

PDF, 93 KB

english, 2007

33

A single European aspen (Populus tremula) tree individual may potentially harbour dozens of Cenococcum geophilum ITS genotypes and hundreds of species of ectomycorrhizal fungi

Mohammad Bahram, Sergei Põlme, Urmas Kõljalg, Leho Tedersoo

Journal:

FEMS Microbiology Ecology

Year:

2011

Language:

english

File:

PDF, 280 KB

english, 2011

34

Influence of aqueous extracts of medicinal plants on surface hydrophobicity of Escherichia coli strains of different origin

MALL TÜURI, ENDEL TÜURI, SIIRI KÕLJALG, MARIKA MIKELSAAR

Journal:

Year:

1997

Language:

english

File:

PDF, 584 KB

english, 1997

35

Intestinal lactoflora in Estonian and Norwegian patients with antibiotic associated diarrhea

Epp Sepp, Jelena Štšepetova, Imbi Smidt, Merle Rätsep, Siiri Kõljalg, Krista Lõivukene, Reet Mändar, Liis Jaanimäe, Iren H. Löhr, Olav B. Natås, Paul Naaber

Journal:

Year:

2011

Language:

english

File:

PDF, 233 KB

english, 2011

36

Diversity and community structure of ectomycorrhizal fungi in a wooded meadow

Leho Tedersoo, Triin Suvi, Ellen Larsson, Urmas Kõljalg

Journal:

Mycological Research

Year:

2006

Language:

english

File:

PDF, 441 KB

english, 2006

37

Fruiting body-guided molecular identification of root-tip mantle mycelia provides strong indications of ectomycorrhizal associations in two species of Sistotrema (Basidiomycota)

R. Henrik Nilsson, Karl-Henrik Larsson, Ellen Larsson, Urmas Kõljalg

Journal:

Mycological Research

Year:

2006

Language:

english

File:

PDF, 587 KB

english, 2006

38

High phylogenetic diversity among corticioid homobasidiomycetes

Karl-Henrik Larsson, Ellen Larsson, Urmas Kõljalg

Journal:

Mycological Research

Year:

2004

Language:

english

File:

PDF, 238 KB

english, 2004

39

Cell surface properties of Acinetobacter baumannii

Siiri KÖLjalg, Jaana Vuopio-Varkila, Outi LyytikÄInen, Marika Mikelsaar, Torkel WadstrÖM

Journal:

Year:

1996

Language:

english

File:

PDF, 1.06 MB

english, 1996

40

Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest

Leho Tedersoo, Triin Naadel, Mohammad Bahram, Karin Pritsch, Franz Buegger, Miguel Leal, Urmas Kõljalg, Kadri Põldmaa

Journal:

New Phytologist

Year:

2012

Language:

english

File:

PDF, 563 KB

english, 2012

41

Antibiotic resistance as an indicator of bacterial chlorhexidine susceptibility

S. Kõljalg, P. Naaber, M. Mikelsaar

Journal:

Journal of Hospital Infection

Year:

2002

Language:

english

File:

PDF, 178 KB

english, 2002

42

Ectomycorrhizal fungi of exotic pine plantations in relation to native host trees in Iran: evidence of host range expansion by local symbionts to distantly related host taxa

Mohammad Bahram, Urmas Kõljalg, Petr Kohout, Shahab Mirshahvaladi, Leho Tedersoo

Journal:

Year:

2013

Language:

english

File:

PDF, 229 KB

english, 2013

43

Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand

Phosri, Cherdchai, Põlme, Sergei, Taylor, Andy F. S., Kõljalg, Urmas, Suwannasai, Nuttika, Tedersoo, Leho

Journal:

Biodiversity and Conservation

Year:

2012

Language:

english

File:

PDF, 254 KB

english, 2012

44

Antibiotic usage and resistance — trends in Estonian University Hospitals

Paul Naaber, Siiri Kõljalg, Matti Maimets

Journal:

International Journal of Antimicrobial Agents

Year:

2000

Language:

english

File:

PDF, 461 KB

english, 2000

45

P1023 Clonality and presence of antibiotic resistance genes of E. coli isolated in recurrent urinary tract infections

K. Truusalu, E. Sepp, J. Shchepetova, S. Koljalg, I. Vainumäe, K. Stroo, K. Sepp, M. Mikelsaar

Journal:

International Journal of Antimicrobial Agents

Year:

2007

Language:

english

File:

PDF, 54 KB

english, 2007

46

Safety of a probiotic cheese containing Lactobacillus plantarum Tensia according to a variety of health indices in different age groups

E. Songisepp, P. Hütt, M. Rätsep, E. Shkut, S. Kõljalg, K. Truusalu, J. Stsepetova, I. Smidt, H. Kolk, M. Zagura, M. Mikelsaar

Journal:

Journal of Dairy Science

Year:

2012

Language:

english

File:

PDF, 473 KB

english, 2012

47

Towards a unified paradigm for sequence-based identification of fungi

Kõljalg, Urmas, Nilsson, R. Henrik, Abarenkov, Kessy, Tedersoo, Leho, Taylor, Andy F. S., Bahram, Mohammad, Bates, Scott T., Bruns, Thomas D., Bengtsson-Palme, Johan, Callaghan, Tony M., Douglas, Bria

Journal:

Molecular Ecology

Year:

2013

Language:

english

File:

PDF, 306 KB

english, 2013

48

The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales

Bahram, Mohammad, Kõljalg, Urmas, Courty, Pierre-Emmanuel, Diédhiou, Abdala G., Kjøller, Rasmus, Põlme, Sergei, Ryberg, Martin, Veldre, Vilmar, Tedersoo, Leho, Wurzburger, Nina

Journal:

Journal of Ecology

Year:

2013

Language:

english

File:

PDF, 2.27 MB

english, 2013

49

The Escherichia coli phylogenetic group B2 with integrons prevails in childhood recurrent urinary tract infections

Kõljalg, Siiri, Truusalu, Kai, Stsepetova, Jelena, Pai, Kristiine, Vainumäe, Inga, Sepp, Epp, Mikelsaar, Marika

Journal:

Year:

2014

Language:

english

File:

PDF, 100 KB

english, 2014

50

Mycorrhiza formed by basidiospores of Tomentella crinalis on Pinus sylvestris

Journal:

Mycological Research

Year:

1992

Language:

english

File:

PDF, 1.58 MB

english, 1992